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| |
Mbp
|
Res-Sus SNP frequency
| |
|---|
|
Chr
|
Start
|
Stop
|
Size
|
Male
|
Female
|
Genes within Region
|
|---|
|
1
|
48.18
|
48.41
|
0.23
|
30%
|
30%
|
APLD,GPRC5A,HEBP1,FAM234B,GSG1, EMP1,MIR6581
|
|
1
|
170.483
|
170.53
|
0.05
|
40%
|
0%
|
CAB39L
|
|
1
|
175.68
|
175.87
|
0.19
|
-25%
|
30%
|
PDS5B
|
|
1
|
182.31
|
182.46
|
0.15
|
40%
|
20%
|
AASDHPPT,KBTBD3,MSANTD4
|
|
1
|
183.65
|
183.95
|
0.30
|
35%
|
35%
|
DCUN1D5,MMP13,MMP10,MMP3,MMP7,BIRC2
|
|
2
|
22.86
|
23.03
|
0.17
|
50%
|
0%
|
SAMD9L,HEPACAM2,VP50
|
|
2
|
34.47
|
34.61
|
0.14
|
40%
|
-20%
|
PLCL2
|
|
2
|
91.85
|
91.92
|
0.07
|
50%
|
0%
|
CNDP2,FAM69C
|
|
2
|
95.14
|
95.22
|
0.08
|
-30%
|
0%
|
CDH19
|
|
2
|
122.75
|
122.83
|
0.08
|
45%
|
-25%
|
CA2
|
|
2
|
126.97
|
127.09
|
0.12
|
40%
|
20%
|
CPQ**
|
|
3
|
37.27
|
37.36
|
0.09
|
-30%
|
40%
|
RYR2
|
|
3
|
48.98
|
49.00
|
0.02
|
-20%
|
30%
|
RMND1
|
|
3
|
50.41
|
50.44
|
0.03
|
40%
|
0%
|
SCAF8
|
|
3
|
100.70
|
101.10
|
0.40
|
0%
|
-30%
|
OSR1
|
|
4
|
36.72
|
36.90
|
0.18
|
40%
|
0%
|
GRID2
|
|
5
|
13.26
|
13.29
|
0.03
|
0%
|
50%
|
DDTNFR23, CARS
|
|
5
|
25.44
|
25.47
|
0.04
|
-50%
|
25%
|
SPTBN5
|
|
6
|
28.82
|
28.87
|
0.05
|
0%
|
40%
|
ABLIM1
|
|
10
|
6.49
|
6.54
|
0.05
|
40%
|
30%
|
TJP1
|
|
14
|
1.48
|
1.66
|
0.18
|
0%
|
30%
|
LMTK2,BHLHA15,TECPR1,BRI3,BAIAP2L1, NPTX2
|
|
20
|
9.06
|
9.10
|
0.04
|
0%
|
-40%
|
PXDNL,PCMTD2
|
|
22
|
4.40
|
4.48
|
0.08
|
60%
|
20%
|
LRRTM4
|
|
27
|
7.85
|
7.98
|
0.13
|
-30%
|
0%
|
RAMP2,WNK4,COA3,BECN1,PSME3,AOC3, G6PC,PTGES3L,RPL27,IFI35,VAT1,RND2
|
|
28
|
0.59
|
0.63
|
0.05
|
-25%
|
0%
|
TIMM44,HNRNPM
|
|
Z
|
18.60
|
18.73
|
0.13
|
-25%
|
-50%
|
PDE4D
|
|
Z
|
19.10
|
19.50
|
0.40
|
25%
|
50%
|
ZSWIM6,KIF2A
|
|
Z
|
33.87
|
33.90
|
0.03
|
25%
|
25%
|
SLC24A2
|
- Regions are listed by Chromosome (Chr) and Megabase pair (Mbp) Start, Stop and Size, in the chicken genome GRCg6a assembly. Res-Sus SNP frequency is the difference in the approximate maximum frequency difference for the non-reference SNP between the phenotypes of the indicated genders. Positive Res-Sus SNP frequency difference indicates the non-reference SNPs are associated with resistance, negative values indicate association with susceptibility. **Gga2 region previously verified as a QTL [34]
